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PacBio Sequencing Data Analysis
PacBio SMRT sequencing represents the first long-read sequencing method that generates reads with an average length of15-20 kb. PacBio HiFi sequencing is characterized by long reads, unbiased coverage, and high accuracy, providing a truly comprehensive view. CD Genomics is providing our customers with a wide range of tools and methods to analyze, visualize and annotate their PacBio sequencing data. Based on our unique bioinformatics analysis platform, we can help researchers and professionals use long-read sequence data for a wide range of genomics analyses and solve a variety of bioinformatics problems.
Analyze and Make the Most of Your Data
- High-quality de novo genome assembly generation.
- Variant calling, including high precision and recall for SNVs, inDels, SVs, CNVs, including in difficult-to-map repetitive regions.
- Full-length RNA transcript identification.
- Epigenetic modification detection, such as allele-specific methylation.
PacBio Sequencing Data Analysis at CD Genomics
We are now providing PacBio Sequel library construction and sequencing services, including sample preparation, high molecular weight DNA (HMW-DNA) isolation, nucleic acid extraction and QC, and PacBio long-read sequencing. In addition to these services, we also offer PacBio sequencing data analysis. Our dedicated bioinformaticians have extensive experience in overcoming these and various other challenges that researchers face every day. We offer the following data analysis services, including,
| Analytical tools | Detection | Applications | Solving problems |
| Whole-genome sequencing analytical tools: SeqMan NGen; SMRT-SV, pbsv, DeepVariant, WhatsHap, SMRT View | De novo assembly and variant detection | Whole-genome sequencing | For human, plant, animal, and microbial genome research |
| RNA sequencing analytical tools: SMRTLink, Iso-Con, SQANTI3, TAPPAS, Kallisto | Isoform detection and characterization (Iso-Seq method) | RNA sequencing | In-depth analysis of cDNA sequences |
| Epigenetic analytical tools: SMRT Link, R-kinetics, motif-finding, IGV | Base modification detection and motif analysis | Epigenetic base modification and methylation detection | Detection of DNA or RNA modifications |
| Complex Populations analytical tools: SMRT Link, SeqMan NGen, DeepVariant, SMRT View | De novo assembly, detection of minor variant and base modifications | Complex populations | Explore variants in bacterial, fungal, and viral cell populations |
Benefits of Our Service
- Multiple analysis tools for different types of PacBio sequencing data.
- A rich set of SMRT sequencing data and resources.
- Robust and customized analytical workflows.
- Dedicated bioinformaticians with extensive experience in long-read sequence data analysis.
- Provide intuitive, easy-to-use, and complete analytical study reports.
Thanks for your interest in our services. For more information about our services, please feel free to contact us. We will be happy to provide you with all the support we can to help you build an ongoing professional relationship.
Related Services
- Human Genomics with Long-Read Sequencing
- Animal and Plant Genomics with Long-Read Sequencing
- Microbial Genomics with Long-Read Sequencing
- Transcriptomics with Long-Read Sequencing
- Epigenetics and Methylation Analysis Using Long-Read Sequencing
- Whole-Genome Resequencing with Long-Read Sequencing
- PacBio Pre-Made Library Sequencing